Aquatics Genomics Research Platform (AGRP)

The Aquatics Genomics Research Platform (AGRP) provides the necessary research infrastructure and workspace for researchers conducting molecular biological studies in the field of aquatic research.

Aquatics Genomics Research Platform (AGRP)

The platform is equipped with laboratory equipment for capabilities that extend from DNA extraction through to Sanger Sequencing, as well as Next-Generation Sequencing. In addition, staff provide technical support to users of the platform. The training provided by the platform manager enables those with little or no practical experience to gain the skills needed to obtain their qualifications or to pursue a career in molecular work. The platform offers dedicated workstations for 18 users.

Project Partners and Funders:

    

Contact AGRP
Intro
Socio-economic implications
  • SAIAB’s marine platforms and Genomics Laboratory provide the necessary research infrastructure for identifying marine-sourced antiviral and antibiotic novel compounds.
  • Genomics research is a fundamental component of modern fisheries management and aquaculture development.
  • Provides cutting-edge genomics tools that enable sustainable management of aquatic biodiversity and resources.
  • Builds national capacity through training, skills development, and equitable access to infrastructure, the platform strengthens South Africa’s bioeconomy and supports evidence-based policy and conservation.
  • Underpins food security, ecosystem resilience, and innovation in aquatic science.
Users
  • Universities, non-government organisations and museums, predominantly those from the Eastern Cape.
  • Over 100 users each year from multiple institutions throughout Africa (Universities, Technical colleges, governmental organizations and museums)
Future
  • Development of bioinformatics capability
  • Collaboration with DSI/NRF Joint Marine Labs University of Fort Hare Bioeconomy Unit
  • Expanding our role as a national hub for aquatic genomics by strengthening high-throughput sequencing, bioinformatics capacity, and environmental DNA applications.
  • Supporting applied research in fisheries, aquaculture, and biodiversity monitoring, while continuing to build human capacity through training and collaborative projects.
  • Enhancing regional and international partnerships to ensure that genomics research contributes meaningfully to sustainable resource management and socio-economic development.
Functionality
  • DNA extraction, DNA quantification and quality evaluation
  • PCR and qPCR
  • Barcoding
  • Environmental DNA analysis
  • Sanger sequencing
  • Next generation sequencing
  • Illumina MiSeq Next Generation Sequencing
  • Oxford Nanopore Next Generation Sequencing
Transformation & Capacity Development
The platform prioritizes skills development in molecular biology and bioinformatics, with a strong focus on supporting early-career researchers and historically disadvantaged institutions. This includes:
  • School groups & school engagements
  • Student training, specialised genomics and bioinformatics training workshops
  • Extensive postgraduate utilisation and hands-on training
Funders
DSTI, NRF-SAIAB, Rhodes University, DIPLOMICS

The Team

AGRP Instrument Scientist
Dr Gwynneth Matcher
SAIAB PhD Research Student
Jody Oliver
Dr Etienne de Villiers
Tshegofatso Munisi
Me-Kuthi Gogela