Aquatics Genomics Research Platform (AGRP)

The Aquatics Genomics Research Platform (AGRP) provides the necessary research infrastructure and workspace for researchers conducting molecular biological studies in the field of aquatic research.

Aquatics Genomics Research Platform (AGRP)

The platform is equipped with laboratory equipment for capabilities that extend from DNA extraction through to Sanger Sequencing, as well as Next-Generation Sequencing. In addition, staff provide technical support to users of the platform. The training provided by the platform manager enables those with little or no practical experience to gain the skills needed to obtain their qualifications or to pursue a career in molecular work. The platform offers dedicated workstations for 18 users.

Contact AGRP
Intro
Socio-economic implications
  • SAIAB’s marine platforms and Genomics Laboratory provide the necessary research infrastructure for identifying marine-sourced antiviral and antibiotic novel compounds.
  • Genomics research is a fundamental component of modern fisheries management and aquaculture development.
Users
  • Universities, non-government organisations and museums, predominantly those from the Eastern Cape.
  • Around 40 users annually
Future
  • Development of bioinformatics capability
  • Collaboration with DSI/NRF Joint Marine Labs University of Fort Hare Bioeconomy Unit
Functionality
  • DNA extraction, DNA quantification and quality evaluation
  • PCR and qPCR
  • Barcoding
  • Environmental DNA analysis
  • Sanger sequencing
  • Next generation sequencing
Transformation & Capacity Development
  • School groups
  • Student training
  • Extensive postgraduate utilisation
Funders
DSI, NRF-SAIAB, Rhodes University

The Team

AGRP Instrument Scientist
Dr Gwynneth Matcher
SAIAB PhD Research Student
Jody Oliver